atlinter package

Subpackages

• atlinter.metrics package
  • Submodules
    • atlinter.metrics.fid module
      • FID
  • Module contents
    • FID
      • FID.score()

Submodules

• atlinter.data module
  • GeneDataset
    • GeneDataset.get_closest_known()
    • GeneDataset.get_surrounding_slices()
• atlinter.optical_flow module
  • GeneOpticalFlow
    • GeneOpticalFlow.predict_ref_flow()
    • GeneOpticalFlow.predict_slice()
    • GeneOpticalFlow.predict_volume()
  • MaskFlowNet
    • MaskFlowNet.network
    • MaskFlowNet.predict_flow()
    • MaskFlowNet.predict_new_data
    • MaskFlowNet.preprocess_images()
  • OpticalFlow
    • OpticalFlow.predict_flow()
    • OpticalFlow.preprocess_images()
    • OpticalFlow.warp_image()
  • RAFTNet
    • RAFTNet.RAFT
      • RAFTNet.RAFT.forward()
      • RAFTNet.RAFT.freeze_bn()
      • RAFTNet.RAFT.initialize_flow()
      • RAFTNet.RAFT.training
      • RAFTNet.RAFT.upsample_flow()
    • RAFTNet.initialize_namespace()
    • RAFTNet.predict_flow()
    • RAFTNet.preprocess_images()
• atlinter.pair_interpolation module
  • AntsPairInterpolationModel
    • AntsPairInterpolationModel.interpolate()
  • CAINPairInterpolationModel
    • CAINPairInterpolationModel.interpolate()
  • GeneInterpolate
    • GeneInterpolate.get_all_interpolation()
    • GeneInterpolate.get_interpolation()
    • GeneInterpolate.get_n_repeat()
    • GeneInterpolate.get_predicted_section_numbers()
    • GeneInterpolate.predict_slice()
    • GeneInterpolate.predict_volume()
  • LinearPairInterpolationModel
    • LinearPairInterpolationModel.interpolate()
  • PairInterpolate
    • PairInterpolate.repeat()
  • PairInterpolationModel
    • PairInterpolationModel.after_interpolation()
    • PairInterpolationModel.before_interpolation()
    • PairInterpolationModel.interpolate()
  • RIFEPairInterpolationModel
    • RIFEPairInterpolationModel.after_interpolation()
    • RIFEPairInterpolationModel.before_interpolation()
    • RIFEPairInterpolationModel.interpolate()
• atlinter.utils module
  • find_closest()

Module contents

Atlas Interpolation - reconstruct missing brain volume slices.